@pipeworx/ensembl

Connect: https://gateway.pipeworx.io/ensembl/mcp · Install: one-click buttons

Tools: 7

Ensembl REST API MCP — vertebrate genomes, gene annotations, sequences, comparative genomics, variation. Keyless.

Tools

• lookup(id, expand?) — by stable id (gene/transcript/exon/translation)
• lookup_symbol(species, symbol) — gene by symbol within a species
• xrefs(species, symbol) — external cross-references for a gene symbol
• sequence(id, type?) — DNA / cDNA / CDS / protein sequence
• homology(species, symbol_or_id, target_species?) — homology mappings
• variation(species, variant_id) — variation by name (e.g. “rs56116432”)
• vep(species, region, allele) — Variant Effect Predictor (region: “9:22125504-22125504:1”)
• xref_symbol(species, symbol) — symbol lookup (alias for /xrefs/symbol)

Data source

https://rest.ensembl.org

Tools

• lookup — Lookup by stable id (gene/transcript/exon/translation).
• lookup_symbol — Gene by symbol within a species.
• xrefs — External cross-references for a gene symbol.
• sequence — Sequence by stable id.
• homology — Homology mappings for a gene.
• variation — Variation record by name.
• vep — Variant Effect Predictor — region in “chrom:start-end:strand” form.