sequence

Pack: ensembl · Endpoint: https://gateway.pipeworx.io/ensembl/mcp

Sequence by stable id.

Parameters

NameTypeRequiredDescription
idstringyes
typestringnogenomic (default) | cdna | cds | protein

Example call

curl -X POST https://gateway.pipeworx.io/ensembl/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"sequence","arguments":{}}}'

Response shape

FieldTypeDescription
seqstringDNA or protein sequence
idstringStable ID
query_typestringQuery type (genomic/cdna/cds/protein)
molecule_typestringMolecule type
Full JSON Schema
{
  "type": "object",
  "description": "Sequence data for a stable ID",
  "properties": {
    "seq": {
      "type": "string",
      "description": "DNA or protein sequence"
    },
    "id": {
      "type": "string",
      "description": "Stable ID"
    },
    "query_type": {
      "type": "string",
      "description": "Query type (genomic/cdna/cds/protein)"
    },
    "molecule_type": {
      "type": "string",
      "description": "Molecule type"
    }
  }
}

Connect

Add this to your MCP client config, or use one-click install buttons:

{
  "mcpServers": {
    "ensembl": {
      "url": "https://gateway.pipeworx.io/ensembl/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

Regenerated from source · build May 21, 2026