MyGene.info

liveBiologyHealth

BioThings gene annotation joining NCBI/Ensembl/UniProt/KEGG/OMIM. Keyless.

5tools
0msauth
free tier50 calls/day

Tools

queryrequired: query

Full-text gene query.

Parameters
NameTypeDescription
queryreqstring—
speciesoptstring—
fieldsoptstring—
sizeoptnumber—
sortoptstring—
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generequired: gene_id

Annotations for a gene id.

Parameters
NameTypeDescription
gene_idreqstring—
fieldsoptstring—
speciesoptstring—
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query_manyrequired: ids

Batch lookup.

Parameters
NameTypeDescription
idsreqarray—
scopesoptstring—
speciesoptstring—
fieldsoptstring—
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metadata

Release / source metadata.

No parameters required.

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taxonomyrequired: species

Species taxonomy info.

Parameters
NameTypeDescription
speciesreqstring—
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Test with curl

The gateway speaks JSON-RPC 2.0 over HTTP POST. You can test any pack directly from the terminal.

List available tools
bash
curl -X POST https://gateway.pipeworx.io/mygene-info/mcp \
  -H "Content-Type: application/json" \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/list"}'
Call a tool
bash
curl -X POST https://gateway.pipeworx.io/mygene-info/mcp \
  -H "Content-Type: application/json" \
  -d '{"jsonrpc":"2.0","id":2,"method":"tools/call","params":{"name":"query","arguments":{"query": "hello"}}}'

Use with the SDK

Install @pipeworx/sdk to call tools from any TypeScript/Node project.

TypeScript
import { Pipeworx } from '@pipeworx/sdk';
const px = new Pipeworx();
const result = await px.call("query", {"query":"example"});
ask_pipeworx
// Or ask in plain English:
const answer = await px.ask("biothings gene annotation joining ncbi/ensembl/uniprot/kegg/omim");