Monarch Initiative
live BioKnowledge GraphMonarch biomedical knowledge graph — diseases, phenotypes, genes, variants. Keyless.
5 tools
0ms auth
free tier 50 calls/day
Tools
search
required: query Node search.
Parameters
Name Type Description
query req string — category opt string — limit opt number — offset opt number — Try it
Response
entity
required: id Node by curie.
Parameters
Name Type Description
id req string — Try it
Response
associations
required: entity_id Associations involving an entity.
Parameters
Name Type Description
entity_id req string — category opt string — predicate opt string — direction opt string — limit opt number — Try it
Response
phenotype_to_gene
required: phenotype_id Genes for a phenotype.
Parameters
Name Type Description
phenotype_id req string — Try it
Response
gene_to_disease
required: gene_id Diseases for a gene.
Parameters
Name Type Description
gene_id req string — Try it
Response
Test with curl
The gateway speaks JSON-RPC 2.0 over HTTP POST. You can test any pack directly from the terminal.
List available tools
bash
curl -X POST https://gateway.pipeworx.io/monarch-initiative/mcp \
-H "Content-Type: application/json" \
-d '{"jsonrpc":"2.0","id":1,"method":"tools/list"}'Call a tool
bash
curl -X POST https://gateway.pipeworx.io/monarch-initiative/mcp \
-H "Content-Type: application/json" \
-d '{"jsonrpc":"2.0","id":2,"method":"tools/call","params":{"name":"search","arguments":{"query": "hello"}}}'Use with the SDK
Install @pipeworx/sdk to call tools from any TypeScript/Node project.
TypeScript
import { Pipeworx } from '@pipeworx/sdk';
const px = new Pipeworx();
const result = await px.call("search", {"query":"example"}); ask_pipeworx
// Or ask in plain English:
const answer = await px.ask("monarch biomedical knowledge graph — diseases, phenotypes, genes, variants");Related packs
Other Pipeworx packs in the same categories (Bio, Knowledge Graph):