Monarch Initiative

liveBiologyHealth

Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants. Keyless.

5tools
0msauth
free tier50 calls/day

Tools

entityrequired: id

Node by curie.

Parameters
NameTypeDescription
idreqstring—
▶Try it
associationsrequired: entity_id

Associations involving an entity.

Parameters
NameTypeDescription
entity_idreqstring—
categoryoptstring—
predicateoptstring—
directionoptstring—
limitoptnumber—
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phenotype_to_generequired: phenotype_id

Genes for a phenotype.

Parameters
NameTypeDescription
phenotype_idreqstring—
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gene_to_diseaserequired: gene_id

Diseases for a gene.

Parameters
NameTypeDescription
gene_idreqstring—
▶Try it

Test with curl

The gateway speaks JSON-RPC 2.0 over HTTP POST. You can test any pack directly from the terminal.

List available tools
bash
curl -X POST https://gateway.pipeworx.io/monarch-initiative/mcp \
  -H "Content-Type: application/json" \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/list"}'
Call a tool
bash
curl -X POST https://gateway.pipeworx.io/monarch-initiative/mcp \
  -H "Content-Type: application/json" \
  -d '{"jsonrpc":"2.0","id":2,"method":"tools/call","params":{"name":"search","arguments":{"query": "hello"}}}'

Use with the SDK

Install @pipeworx/sdk to call tools from any TypeScript/Node project.

TypeScript
import { Pipeworx } from '@pipeworx/sdk';
const px = new Pipeworx();
const result = await px.call("search", {"query":"example"});
ask_pipeworx
// Or ask in plain English:
const answer = await px.ask("monarch biomedical knowledge graph — diseases, phenotypes, genes, variants");